Visium HD · Human Tissue Architecture

10x Genomics spatial transcriptomics · 11 mm capture area · Human Lung Cancer, Breast Cancer and Colon Cancer Tissue Array (FFPE)

Spatial Cell Browser

509,000 segmented cells
on human tissue

Pan and zoom through the full tissue map. Explore Azimuth cell types, graphclust clusters, UMAP, per-cell gene expression, and polygon overlays.

509K cells Azimuth cell types UMAP Clusters Cell polygons Diff. expression

Open Spatial Browser →

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Inputs

Outputs

10x Genomics Tools

Space Ranger 4.1.0

Pipeline used to generate these outputs. Aligns FASTQs to the probe set, registers the tissue image to the slide grid, runs cell segmentation and cell type annotation.

10xgenomics.com › space-ranger › downloads

Desktop application for exploring .cloupe files. Browse spatial expression, annotate clusters, compare cell types, and visualise gene expression overlaid on the histology image.

10xgenomics.com › loupe-browser › downloads